Cluster: HRGMv2_3649_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3649
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3649_36 | HRGMv2_3649_36_6 | 4589 | 5740 | - | GT28 |
| pfam | HRGMv2_3649_36 | HRGMv2_3649_36_7 | 5733 | 6644 | - | Ank | Ank | Ank | Ank_2 | Ank_2 | Ank_3 | Ank_4 | Ank_4 | Ank_5 |
| pfam | HRGMv2_3649_36 | HRGMv2_3649_36_8 | 6785 | 7342 | + | TrpP |
| TC | HRGMv2_3649_36 | HRGMv2_3649_36_9 | 7354 | 8196 | + | 3.A.1.32.3 |
| TC | HRGMv2_3649_36 | HRGMv2_3649_36_10 | 8193 | 9020 | + | 3.A.1.33.1 |
Gene ID: HRGMv2_3649_36_6
Type: CAZyme
Location: 4589 - 5740 (-)
Type: CAZyme
Location: 4589 - 5740 (-)
Gene ID: HRGMv2_3649_36_7
Type: pfam
Location: 5733 - 6644 (-)
Type: pfam
Location: 5733 - 6644 (-)
Gene ID: HRGMv2_3649_36_8
Type: pfam
Location: 6785 - 7342 (+)
Type: pfam
Location: 6785 - 7342 (+)
Gene ID: HRGMv2_3649_36_9
Type: TC
Location: 7354 - 8196 (+)
Type: TC
Location: 7354 - 8196 (+)
Gene ID: HRGMv2_3649_36_10
Type: TC
Location: 8193 - 9020 (+)
Type: TC
Location: 8193 - 9020 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.