Cluster: HRGMv2_3649_CGC21
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3649
- CGC Family ID: CGCFAM_01430
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3649_33 | HRGMv2_3649_33_9 | 6278 | 7297 | + | GH5_37 |
| CAZyme | HRGMv2_3649_33 | HRGMv2_3649_33_10 | 7322 | 9550 | + | CBM4 | CBM4 | CBM4 | GH16_3 |
| NULL(UNKNOWN) | HRGMv2_3649_33 | HRGMv2_3649_33_11 | 9662 | 10102 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3649_33 | HRGMv2_3649_33_12 | 10276 | 11604 | - | 2.A.66.1.37 |
Gene ID: HRGMv2_3649_33_9
Type: CAZyme
Location: 6278 - 7297 (+)
Type: CAZyme
Location: 6278 - 7297 (+)
Gene ID: HRGMv2_3649_33_10
Type: CAZyme
Location: 7322 - 9550 (+)
Type: CAZyme
Location: 7322 - 9550 (+)
Gene ID: HRGMv2_3649_33_11
Type:
Location: 9662 - 10102 (-)
Type:
Location: 9662 - 10102 (-)
Gene ID: HRGMv2_3649_33_12
Type: TC
Location: 10276 - 11604 (-)
Type: TC
Location: 10276 - 11604 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.