Cluster: HRGMv2_3649_CGC20
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3649
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3649_32 | HRGMv2_3649_32_16 | 16044 | 16490 | - | 4.A.2.1.4 |
| TF | HRGMv2_3649_32 | HRGMv2_3649_32_17 | 16579 | 17466 | - | HTH_AraC |
| CAZyme | HRGMv2_3649_32 | HRGMv2_3649_32_18 | 17615 | 20386 | + | GH3 |
Gene ID: HRGMv2_3649_32_16
Type: TC
Location: 16044 - 16490 (-)
Type: TC
Location: 16044 - 16490 (-)
Gene ID: HRGMv2_3649_32_17
Type: TF
Location: 16579 - 17466 (-)
Type: TF
Location: 16579 - 17466 (-)
Gene ID: HRGMv2_3649_32_18
Type: CAZyme
Location: 17615 - 20386 (+)
Type: CAZyme
Location: 17615 - 20386 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.