Cluster: HRGMv2_3649_CGC2
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3649
- CGC Family ID: CGCFAM_01794
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3649_5 | HRGMv2_3649_5_18 | 19709 | 20983 | + | 9.A.40.2.1 |
| TC | HRGMv2_3649_5 | HRGMv2_3649_5_19 | 20980 | 22245 | + | 9.A.40.2.4 |
| pfam | HRGMv2_3649_5 | HRGMv2_3649_5_20 | 22240 | 22890 | - | Cytidylate_kin2 |
| pfam | HRGMv2_3649_5 | HRGMv2_3649_5_21 | 22961 | 23707 | - | PseudoU_synth_2 |
| TC | HRGMv2_3649_5 | HRGMv2_3649_5_22 | 23752 | 24522 | - | 3.A.1.14.18 |
| TC | HRGMv2_3649_5 | HRGMv2_3649_5_23 | 24510 | 25478 | - | 3.A.1.14.16 |
| TC | HRGMv2_3649_5 | HRGMv2_3649_5_24 | 25487 | 26329 | - | 3.A.1.14.19 |
| STP | HRGMv2_3649_5 | HRGMv2_3649_5_25 | 26330 | 27016 | - | Pribosyltran |
| CAZyme | HRGMv2_3649_5 | HRGMv2_3649_5_26 | 27092 | 29518 | - | GH94 |
| STP | HRGMv2_3649_5 | HRGMv2_3649_5_27 | 29801 | 31105 | + | SBP_bac_1 |
| TC | HRGMv2_3649_5 | HRGMv2_3649_5_28 | 31261 | 32220 | + | 3.A.1.1.4 |
| TC | HRGMv2_3649_5 | HRGMv2_3649_5_29 | 32236 | 33075 | + | 3.A.1.1.34 |
| CAZyme | HRGMv2_3649_5 | HRGMv2_3649_5_30 | 33100 | 34695 | + | CBM91 | GH43_11 |
Gene ID: HRGMv2_3649_5_18
Type: TC
Location: 19709 - 20983 (+)
Type: TC
Location: 19709 - 20983 (+)
Gene ID: HRGMv2_3649_5_19
Type: TC
Location: 20980 - 22245 (+)
Type: TC
Location: 20980 - 22245 (+)
Gene ID: HRGMv2_3649_5_20
Type: pfam
Location: 22240 - 22890 (-)
Type: pfam
Location: 22240 - 22890 (-)
Gene ID: HRGMv2_3649_5_21
Type: pfam
Location: 22961 - 23707 (-)
Type: pfam
Location: 22961 - 23707 (-)
Gene ID: HRGMv2_3649_5_22
Type: TC
Location: 23752 - 24522 (-)
Type: TC
Location: 23752 - 24522 (-)
Gene ID: HRGMv2_3649_5_23
Type: TC
Location: 24510 - 25478 (-)
Type: TC
Location: 24510 - 25478 (-)
Gene ID: HRGMv2_3649_5_24
Type: TC
Location: 25487 - 26329 (-)
Type: TC
Location: 25487 - 26329 (-)
Gene ID: HRGMv2_3649_5_25
Type: STP
Location: 26330 - 27016 (-)
Type: STP
Location: 26330 - 27016 (-)
Gene ID: HRGMv2_3649_5_26
Type: CAZyme
Location: 27092 - 29518 (-)
Type: CAZyme
Location: 27092 - 29518 (-)
Gene ID: HRGMv2_3649_5_27
Type: STP
Location: 29801 - 31105 (+)
Type: STP
Location: 29801 - 31105 (+)
Gene ID: HRGMv2_3649_5_28
Type: TC
Location: 31261 - 32220 (+)
Type: TC
Location: 31261 - 32220 (+)
Gene ID: HRGMv2_3649_5_29
Type: TC
Location: 32236 - 33075 (+)
Type: TC
Location: 32236 - 33075 (+)
Gene ID: HRGMv2_3649_5_30
Type: CAZyme
Location: 33100 - 34695 (+)
Type: CAZyme
Location: 33100 - 34695 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.