Cluster: HRGMv2_3649_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3649
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3649_26 | HRGMv2_3649_26_19 | 17787 | 20255 | + | GH94 |
| TF | HRGMv2_3649_26 | HRGMv2_3649_26_20 | 20347 | 21375 | - | LacI |
| pfam | HRGMv2_3649_26 | HRGMv2_3649_26_21 | 21691 | 22896 | + | Peripla_BP_4 | Peripla_BP_7 |
| TC | HRGMv2_3649_26 | HRGMv2_3649_26_22 | 23126 | 24619 | + | 3.A.1.2.3 |
| TC | HRGMv2_3649_26 | HRGMv2_3649_26_23 | 24637 | 26319 | + | 3.A.1.2.3 |
| STP | HRGMv2_3649_26 | HRGMv2_3649_26_24 | 26903 | 28108 | + | Aminotran_1_2 |
| CAZyme | HRGMv2_3649_26 | HRGMv2_3649_26_25 | 28105 | 29586 | + | GT5 |
Gene ID: HRGMv2_3649_26_19
Type: CAZyme
Location: 17787 - 20255 (+)
Type: CAZyme
Location: 17787 - 20255 (+)
Gene ID: HRGMv2_3649_26_20
Type: TF
Location: 20347 - 21375 (-)
Type: TF
Location: 20347 - 21375 (-)
Gene ID: HRGMv2_3649_26_21
Type: pfam
Location: 21691 - 22896 (+)
Type: pfam
Location: 21691 - 22896 (+)
Gene ID: HRGMv2_3649_26_22
Type: TC
Location: 23126 - 24619 (+)
Type: TC
Location: 23126 - 24619 (+)
Gene ID: HRGMv2_3649_26_23
Type: TC
Location: 24637 - 26319 (+)
Type: TC
Location: 24637 - 26319 (+)
Gene ID: HRGMv2_3649_26_24
Type: STP
Location: 26903 - 28108 (+)
Type: STP
Location: 26903 - 28108 (+)
Gene ID: HRGMv2_3649_26_25
Type: CAZyme
Location: 28105 - 29586 (+)
Type: CAZyme
Location: 28105 - 29586 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.