Cluster: HRGMv2_3649_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3649
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3649_16 | HRGMv2_3649_16_39 | 43441 | 45150 | - | 8.A.7.1.5 |
| STP | HRGMv2_3649_16 | HRGMv2_3649_16_40 | 45279 | 47249 | + | GGDEF | Peripla_BP_3 |
| NULL(UNKNOWN) | HRGMv2_3649_16 | HRGMv2_3649_16_41 | 47246 | 47740 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3649_16 | HRGMv2_3649_16_42 | 47926 | 48693 | + | GH23 |
Gene ID: HRGMv2_3649_16_39
Type: TC
Location: 43441 - 45150 (-)
Type: TC
Location: 43441 - 45150 (-)
Gene ID: HRGMv2_3649_16_40
Type: STP
Location: 45279 - 47249 (+)
Type: STP
Location: 45279 - 47249 (+)
Gene ID: HRGMv2_3649_16_41
Type:
Location: 47246 - 47740 (+)
Type:
Location: 47246 - 47740 (+)
Gene ID: HRGMv2_3649_16_42
Type: CAZyme
Location: 47926 - 48693 (+)
Type: CAZyme
Location: 47926 - 48693 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.