Cluster: HRGMv2_3649_CGC13
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3649
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3649_16 | HRGMv2_3649_16_33 | 36437 | 37435 | - | CBM50 |
| pfam | HRGMv2_3649_16 | HRGMv2_3649_16_34 | 37444 | 38049 | - | FtsJ |
| TC | HRGMv2_3649_16 | HRGMv2_3649_16_35 | 38242 | 40179 | + | 4.C.1.1.14 |
Gene ID: HRGMv2_3649_16_33
Type: CAZyme
Location: 36437 - 37435 (-)
Type: CAZyme
Location: 36437 - 37435 (-)
Gene ID: HRGMv2_3649_16_34
Type: pfam
Location: 37444 - 38049 (-)
Type: pfam
Location: 37444 - 38049 (-)
Gene ID: HRGMv2_3649_16_35
Type: TC
Location: 38242 - 40179 (+)
Type: TC
Location: 38242 - 40179 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.