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Cluster: HRGMv2_3649_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3649_15 HRGMv2_3649_15_1 3 890 + GT4
CAZyme HRGMv2_3649_15 HRGMv2_3649_15_2 883 1674 + GT32
pfam HRGMv2_3649_15 HRGMv2_3649_15_3 1794 2285 + Glyco_transf_4 | Glyco_trans_4_2 | Glyco_trans_4_4
CAZyme HRGMv2_3649_15 HRGMv2_3649_15_4 2260 2943 + GT4
pfam HRGMv2_3649_15 HRGMv2_3649_15_5 2995 3390 + Glycos_transf_1
pfam HRGMv2_3649_15 HRGMv2_3649_15_6 3395 3646 + Glycos_transf_1 | Glyco_trans_1_4
TC HRGMv2_3649_15 HRGMv2_3649_15_7 3807 5135 + 2.A.66.1.33
NULL(UNKNOWN) HRGMv2_3649_15 HRGMv2_3649_15_8 5636 6139 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3649_15 HRGMv2_3649_15_9 6147 7817 + SPOR
CAZyme HRGMv2_3649_15 HRGMv2_3649_15_10 7969 9981 + CBM61 | GH53
Gene ID: HRGMv2_3649_15_1
Type: CAZyme
Location: 3 - 890 (+)
Gene ID: HRGMv2_3649_15_2
Type: CAZyme
Location: 883 - 1674 (+)
Gene ID: HRGMv2_3649_15_3
Type: pfam
Location: 1794 - 2285 (+)
Gene ID: HRGMv2_3649_15_4
Type: CAZyme
Location: 2260 - 2943 (+)
Gene ID: HRGMv2_3649_15_5
Type: pfam
Location: 2995 - 3390 (+)
Gene ID: HRGMv2_3649_15_6
Type: pfam
Location: 3395 - 3646 (+)
Gene ID: HRGMv2_3649_15_7
Type: TC
Location: 3807 - 5135 (+)
Gene ID: HRGMv2_3649_15_8
Type:
Location: 5636 - 6139 (+)
Gene ID: HRGMv2_3649_15_9
Type: pfam
Location: 6147 - 7817 (+)
Gene ID: HRGMv2_3649_15_10
Type: CAZyme
Location: 7969 - 9981 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Spirochaetota
→
Class
Spirochaetia
→
Order
Treponematales
→
Family
Treponemataceae
→
Genus
Treponema_D
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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