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Cluster: HRGMv2_3649_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3649_13 HRGMv2_3649_13_49 55749 57560 - GT8
CAZyme HRGMv2_3649_13 HRGMv2_3649_13_50 57553 58389 - GT8
NULL(UNKNOWN) HRGMv2_3649_13 HRGMv2_3649_13_51 58438 59223 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3649_13 HRGMv2_3649_13_52 59350 60306 + 3.A.1.34.1
TC HRGMv2_3649_13 HRGMv2_3649_13_53 60452 61414 + 3.A.1.34.1
TC HRGMv2_3649_13 HRGMv2_3649_13_54 61407 62210 + 3.A.1.34.1
pfam HRGMv2_3649_13 HRGMv2_3649_13_55 62218 62478 + TSCPD
TC HRGMv2_3649_13 HRGMv2_3649_13_56 62609 63424 - 3.A.1.1.4
TC HRGMv2_3649_13 HRGMv2_3649_13_57 63421 64305 - 3.A.1.1.4
TC HRGMv2_3649_13 HRGMv2_3649_13_58 64386 65666 - 3.A.1.1.4
CAZyme HRGMv2_3649_13 HRGMv2_3649_13_59 65873 68959 + GH2
Gene ID: HRGMv2_3649_13_49
Type: CAZyme
Location: 55749 - 57560 (-)
Gene ID: HRGMv2_3649_13_50
Type: CAZyme
Location: 57553 - 58389 (-)
Gene ID: HRGMv2_3649_13_51
Type:
Location: 58438 - 59223 (-)
Gene ID: HRGMv2_3649_13_52
Type: TC
Location: 59350 - 60306 (+)
Gene ID: HRGMv2_3649_13_53
Type: TC
Location: 60452 - 61414 (+)
Gene ID: HRGMv2_3649_13_54
Type: TC
Location: 61407 - 62210 (+)
Gene ID: HRGMv2_3649_13_55
Type: pfam
Location: 62218 - 62478 (+)
Gene ID: HRGMv2_3649_13_56
Type: TC
Location: 62609 - 63424 (-)
Gene ID: HRGMv2_3649_13_57
Type: TC
Location: 63421 - 64305 (-)
Gene ID: HRGMv2_3649_13_58
Type: TC
Location: 64386 - 65666 (-)
Gene ID: HRGMv2_3649_13_59
Type: CAZyme
Location: 65873 - 68959 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Spirochaetota
→
Class
Spirochaetia
→
Order
Treponematales
→
Family
Treponemataceae
→
Genus
Treponema_D
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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