Cluster: HRGMv2_3645_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3645
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3645_1 | HRGMv2_3645_1_163 | 173057 | 174256 | + | 3.A.1.1.2 |
| TC | HRGMv2_3645_1 | HRGMv2_3645_1_164 | 174406 | 175728 | + | 3.A.1.1.6 |
| TC | HRGMv2_3645_1 | HRGMv2_3645_1_165 | 175725 | 176567 | + | 3.A.1.1.6 |
| NULL(UNKNOWN) | HRGMv2_3645_1 | HRGMv2_3645_1_166 | 177093 | 178397 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3645_1 | HRGMv2_3645_1_167 | 178894 | 181074 | + | GH35 |
Gene ID: HRGMv2_3645_1_163
Type: TC
Location: 173057 - 174256 (+)
Type: TC
Location: 173057 - 174256 (+)
Gene ID: HRGMv2_3645_1_164
Type: TC
Location: 174406 - 175728 (+)
Type: TC
Location: 174406 - 175728 (+)
Gene ID: HRGMv2_3645_1_165
Type: TC
Location: 175725 - 176567 (+)
Type: TC
Location: 175725 - 176567 (+)
Gene ID: HRGMv2_3645_1_166
Type:
Location: 177093 - 178397 (-)
Type:
Location: 177093 - 178397 (-)
Gene ID: HRGMv2_3645_1_167
Type: CAZyme
Location: 178894 - 181074 (+)
Type: CAZyme
Location: 178894 - 181074 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D succinifaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.