Cluster: HRGMv2_3645_CGC27
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3645
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3645_13 | HRGMv2_3645_13_43 | 46090 | 47079 | - | GH130_2 |
| CAZyme | HRGMv2_3645_13 | HRGMv2_3645_13_44 | 47098 | 48273 | - | GH130_1 |
| pfam | HRGMv2_3645_13 | HRGMv2_3645_13_45 | 48270 | 49451 | - | GlcNAc_2-epim |
| CAZyme | HRGMv2_3645_13 | HRGMv2_3645_13_46 | 49468 | 51597 | - | CBM27 | GH5_7 |
| TC | HRGMv2_3645_13 | HRGMv2_3645_13_47 | 51609 | 52766 | - | 3.A.1.1.18 |
| TC | HRGMv2_3645_13 | HRGMv2_3645_13_48 | 52792 | 53673 | - | 3.A.1.1.28 |
Gene ID: HRGMv2_3645_13_43
Type: CAZyme
Location: 46090 - 47079 (-)
Type: CAZyme
Location: 46090 - 47079 (-)
Gene ID: HRGMv2_3645_13_44
Type: CAZyme
Location: 47098 - 48273 (-)
Type: CAZyme
Location: 47098 - 48273 (-)
Gene ID: HRGMv2_3645_13_45
Type: pfam
Location: 48270 - 49451 (-)
Type: pfam
Location: 48270 - 49451 (-)
Gene ID: HRGMv2_3645_13_46
Type: CAZyme
Location: 49468 - 51597 (-)
Type: CAZyme
Location: 49468 - 51597 (-)
Gene ID: HRGMv2_3645_13_47
Type: TC
Location: 51609 - 52766 (-)
Type: TC
Location: 51609 - 52766 (-)
Gene ID: HRGMv2_3645_13_48
Type: TC
Location: 52792 - 53673 (-)
Type: TC
Location: 52792 - 53673 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D succinifaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.