Cluster: HRGMv2_3645_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3645
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3645_4 | HRGMv2_3645_4_179 | 180402 | 182543 | + | GH13_11 |
| CAZyme | HRGMv2_3645_4 | HRGMv2_3645_4_180 | 182647 | 185094 | + | GT35 |
| pfam | HRGMv2_3645_4 | HRGMv2_3645_4_181 | 185679 | 186575 | + | EamA | EamA |
| TC | HRGMv2_3645_4 | HRGMv2_3645_4_182 | 186699 | 188003 | + | 1.B.9.2.4 |
Gene ID: HRGMv2_3645_4_179
Type: CAZyme
Location: 180402 - 182543 (+)
Type: CAZyme
Location: 180402 - 182543 (+)
Gene ID: HRGMv2_3645_4_180
Type: CAZyme
Location: 182647 - 185094 (+)
Type: CAZyme
Location: 182647 - 185094 (+)
Gene ID: HRGMv2_3645_4_181
Type: pfam
Location: 185679 - 186575 (+)
Type: pfam
Location: 185679 - 186575 (+)
Gene ID: HRGMv2_3645_4_182
Type: TC
Location: 186699 - 188003 (+)
Type: TC
Location: 186699 - 188003 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D succinifaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.