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Cluster: HRGMv2_3645_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3645_3 HRGMv2_3645_3_54 49950 52418 + GH94
TF HRGMv2_3645_3 HRGMv2_3645_3_55 52511 53539 - LacI
pfam HRGMv2_3645_3 HRGMv2_3645_3_56 53855 55060 + Peripla_BP_4 | Peripla_BP_7
TC HRGMv2_3645_3 HRGMv2_3645_3_57 55182 56675 + 3.A.1.2.3
TC HRGMv2_3645_3 HRGMv2_3645_3_58 56693 58375 + 3.A.1.2.3
STP HRGMv2_3645_3 HRGMv2_3645_3_59 58967 60172 + Aminotran_1_2
CAZyme HRGMv2_3645_3 HRGMv2_3645_3_60 60169 61650 + GT5
Gene ID: HRGMv2_3645_3_54
Type: CAZyme
Location: 49950 - 52418 (+)
Gene ID: HRGMv2_3645_3_55
Type: TF
Location: 52511 - 53539 (-)
Gene ID: HRGMv2_3645_3_56
Type: pfam
Location: 53855 - 55060 (+)
Gene ID: HRGMv2_3645_3_57
Type: TC
Location: 55182 - 56675 (+)
Gene ID: HRGMv2_3645_3_58
Type: TC
Location: 56693 - 58375 (+)
Gene ID: HRGMv2_3645_3_59
Type: STP
Location: 58967 - 60172 (+)
Gene ID: HRGMv2_3645_3_60
Type: CAZyme
Location: 60169 - 61650 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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