Cluster: HRGMv2_3551_CGC5
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3551
- CGC Family ID: CGCFAM_04489
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3551_6 | HRGMv2_3551_6_29 | 32164 | 33630 | - | 2.A.66.1.40 |
| CAZyme | HRGMv2_3551_6 | HRGMv2_3551_6_30 | 33678 | 34877 | - | GT4 |
| CAZyme | HRGMv2_3551_6 | HRGMv2_3551_6_31 | 34874 | 35923 | - | GT2 |
| pfam | HRGMv2_3551_6 | HRGMv2_3551_6_32 | 35984 | 36991 | - | Acyl_transf_3 |
| pfam | HRGMv2_3551_6 | HRGMv2_3551_6_33 | 36991 | 38151 | - | EpsG |
| CAZyme | HRGMv2_3551_6 | HRGMv2_3551_6_34 | 38168 | 39283 | - | GT4 |
| CAZyme | HRGMv2_3551_6 | HRGMv2_3551_6_35 | 39303 | 40181 | - | GT2 |
| CAZyme | HRGMv2_3551_6 | HRGMv2_3551_6_36 | 40147 | 40620 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_3551_6 | HRGMv2_3551_6_37 | 40679 | 40891 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3551_6 | HRGMv2_3551_6_38 | 40956 | 41294 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3551_6 | HRGMv2_3551_6_39 | 41314 | 42438 | - | GT4 |
| pfam | HRGMv2_3551_6 | HRGMv2_3551_6_40 | 42451 | 43413 | - | ATP-grasp_3 | Dala_Dala_lig_C | RimK | ATPgrasp_Ter | PylC-like_N |
| pfam | HRGMv2_3551_6 | HRGMv2_3551_6_41 | 43394 | 43915 | - | Acetyltransf_1 | Acetyltransf_3 | Acetyltransf_4 | Acetyltransf_8 |
| TC | HRGMv2_3551_6 | HRGMv2_3551_6_42 | 43915 | 44430 | - | 9.B.18.1.1 |
Gene ID: HRGMv2_3551_6_29
Type: TC
Location: 32164 - 33630 (-)
Type: TC
Location: 32164 - 33630 (-)
Gene ID: HRGMv2_3551_6_30
Type: CAZyme
Location: 33678 - 34877 (-)
Type: CAZyme
Location: 33678 - 34877 (-)
Gene ID: HRGMv2_3551_6_31
Type: CAZyme
Location: 34874 - 35923 (-)
Type: CAZyme
Location: 34874 - 35923 (-)
Gene ID: HRGMv2_3551_6_32
Type: pfam
Location: 35984 - 36991 (-)
Type: pfam
Location: 35984 - 36991 (-)
Gene ID: HRGMv2_3551_6_33
Type: pfam
Location: 36991 - 38151 (-)
Type: pfam
Location: 36991 - 38151 (-)
Gene ID: HRGMv2_3551_6_34
Type: CAZyme
Location: 38168 - 39283 (-)
Type: CAZyme
Location: 38168 - 39283 (-)
Gene ID: HRGMv2_3551_6_35
Type: CAZyme
Location: 39303 - 40181 (-)
Type: CAZyme
Location: 39303 - 40181 (-)
Gene ID: HRGMv2_3551_6_36
Type: CAZyme
Location: 40147 - 40620 (-)
Type: CAZyme
Location: 40147 - 40620 (-)
Gene ID: HRGMv2_3551_6_37
Type:
Location: 40679 - 40891 (-)
Type:
Location: 40679 - 40891 (-)
Gene ID: HRGMv2_3551_6_38
Type:
Location: 40956 - 41294 (-)
Type:
Location: 40956 - 41294 (-)
Gene ID: HRGMv2_3551_6_39
Type: CAZyme
Location: 41314 - 42438 (-)
Type: CAZyme
Location: 41314 - 42438 (-)
Gene ID: HRGMv2_3551_6_40
Type: pfam
Location: 42451 - 43413 (-)
Type: pfam
Location: 42451 - 43413 (-)
Gene ID: HRGMv2_3551_6_41
Type: pfam
Location: 43394 - 43915 (-)
Type: pfam
Location: 43394 - 43915 (-)
Gene ID: HRGMv2_3551_6_42
Type: TC
Location: 43915 - 44430 (-)
Type: TC
Location: 43915 - 44430 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
TANB77
Family
CAG-508
Genus
CAG-245
Species
CAG-245 sp934122035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.