Cluster: HRGMv2_3544_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3544
- CGC Family ID: CGCFAM_10389
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3544_11 | HRGMv2_3544_11_1 | 125 | 2380 | - | GT2 | GT4 |
| pfam | HRGMv2_3544_11 | HRGMv2_3544_11_2 | 2541 | 3485 | - | Fic | Virulence_RhuM |
| pfam | HRGMv2_3544_11 | HRGMv2_3544_11_3 | 3666 | 4409 | - | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10 | YoaP |
| CAZyme | HRGMv2_3544_11 | HRGMv2_3544_11_4 | 4537 | 5049 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_3544_11 | HRGMv2_3544_11_5 | 4997 | 5659 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3544_11 | HRGMv2_3544_11_6 | 5656 | 7065 | - | O-antigen_lig |
| CAZyme | HRGMv2_3544_11 | HRGMv2_3544_11_7 | 7089 | 8075 | - | GT2 |
| CAZyme | HRGMv2_3544_11 | HRGMv2_3544_11_8 | 8262 | 9215 | - | GT2 |
| CAZyme | HRGMv2_3544_11 | HRGMv2_3544_11_9 | 9383 | 10468 | - | GT4 |
| CAZyme | HRGMv2_3544_11 | HRGMv2_3544_11_10 | 10513 | 13056 | - | GT51 |
| pfam | HRGMv2_3544_11 | HRGMv2_3544_11_11 | 13312 | 14295 | + | Phage_integrase |
| TC | HRGMv2_3544_11 | HRGMv2_3544_11_12 | 14572 | 15489 | - | 3.A.1.121.4 |
Gene ID: HRGMv2_3544_11_1
Type: CAZyme
Location: 125 - 2380 (-)
Type: CAZyme
Location: 125 - 2380 (-)
Gene ID: HRGMv2_3544_11_2
Type: pfam
Location: 2541 - 3485 (-)
Type: pfam
Location: 2541 - 3485 (-)
Gene ID: HRGMv2_3544_11_3
Type: pfam
Location: 3666 - 4409 (-)
Type: pfam
Location: 3666 - 4409 (-)
Gene ID: HRGMv2_3544_11_4
Type: CAZyme
Location: 4537 - 5049 (-)
Type: CAZyme
Location: 4537 - 5049 (-)
Gene ID: HRGMv2_3544_11_5
Type:
Location: 4997 - 5659 (-)
Type:
Location: 4997 - 5659 (-)
Gene ID: HRGMv2_3544_11_6
Type: pfam
Location: 5656 - 7065 (-)
Type: pfam
Location: 5656 - 7065 (-)
Gene ID: HRGMv2_3544_11_7
Type: CAZyme
Location: 7089 - 8075 (-)
Type: CAZyme
Location: 7089 - 8075 (-)
Gene ID: HRGMv2_3544_11_8
Type: CAZyme
Location: 8262 - 9215 (-)
Type: CAZyme
Location: 8262 - 9215 (-)
Gene ID: HRGMv2_3544_11_9
Type: CAZyme
Location: 9383 - 10468 (-)
Type: CAZyme
Location: 9383 - 10468 (-)
Gene ID: HRGMv2_3544_11_10
Type: CAZyme
Location: 10513 - 13056 (-)
Type: CAZyme
Location: 10513 - 13056 (-)
Gene ID: HRGMv2_3544_11_11
Type: pfam
Location: 13312 - 14295 (+)
Type: pfam
Location: 13312 - 14295 (+)
Gene ID: HRGMv2_3544_11_12
Type: TC
Location: 14572 - 15489 (-)
Type: TC
Location: 14572 - 15489 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
TANB77
Family
CAG-508
Genus
CAG-269
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3544_11_2 | vegan > omnivore | 2.32183 | 0.01315 |