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Cluster: HRGMv2_3543_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3543_2 HRGMv2_3543_2_26 27888 28364 - CBM25
pfam HRGMv2_3543_2 HRGMv2_3543_2_27 28728 30716 + VanW | G5 | PG_binding_4
CAZyme HRGMv2_3543_2 HRGMv2_3543_2_28 31096 40239 + CBM13
NULL(UNKNOWN) HRGMv2_3543_2 HRGMv2_3543_2_29 40739 41308 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_3543_2 HRGMv2_3543_2_30 41313 42428 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3543_2 HRGMv2_3543_2_31 42599 43549 + 1.A.35.3.1
Gene ID: HRGMv2_3543_2_26
Type: CAZyme
Location: 27888 - 28364 (-)
Gene ID: HRGMv2_3543_2_27
Type: pfam
Location: 28728 - 30716 (+)
Gene ID: HRGMv2_3543_2_28
Type: CAZyme
Location: 31096 - 40239 (+)
Gene ID: HRGMv2_3543_2_29
Type:
Location: 40739 - 41308 (+)
Gene ID: HRGMv2_3543_2_30
Type:
Location: 41313 - 42428 (+)
Gene ID: HRGMv2_3543_2_31
Type: TC
Location: 42599 - 43549 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
TANB77
→
Family
CAG-508
→
Genus
CAG-269
→
Species
CAG-269 sp900553985

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3543_2_31 vegan > omnivore 1.36184 0.00958

🧭 Explore Read Mapping of CGC

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