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Cluster: HRGMv2_3504_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3504_1 HRGMv2_3504_1_162 191687 193924 + GT51
TC HRGMv2_3504_1 HRGMv2_3504_1_163 194126 195313 - 3.A.1.12.9
TC HRGMv2_3504_1 HRGMv2_3504_1_164 195294 196196 - 3.A.1.12.6
pfam HRGMv2_3504_1 HRGMv2_3504_1_165 196234 197211 - OpuAC
TF HRGMv2_3504_1 HRGMv2_3504_1_166 197360 198007 - GntR
TC HRGMv2_3504_1 HRGMv2_3504_1_167 198833 200353 + 3.A.1.5.27
TC HRGMv2_3504_1 HRGMv2_3504_1_168 200523 201452 + 3.A.1.5.11
TC HRGMv2_3504_1 HRGMv2_3504_1_169 201467 202348 + 3.A.1.5.39
TC HRGMv2_3504_1 HRGMv2_3504_1_170 202362 203351 + 3.A.1.5.1
TC HRGMv2_3504_1 HRGMv2_3504_1_171 203367 204350 + 3.A.1.5.20
Gene ID: HRGMv2_3504_1_162
Type: CAZyme
Location: 191687 - 193924 (+)
Gene ID: HRGMv2_3504_1_163
Type: TC
Location: 194126 - 195313 (-)
Gene ID: HRGMv2_3504_1_164
Type: TC
Location: 195294 - 196196 (-)
Gene ID: HRGMv2_3504_1_165
Type: pfam
Location: 196234 - 197211 (-)
Gene ID: HRGMv2_3504_1_166
Type: TF
Location: 197360 - 198007 (-)
Gene ID: HRGMv2_3504_1_167
Type: TC
Location: 198833 - 200353 (+)
Gene ID: HRGMv2_3504_1_168
Type: TC
Location: 200523 - 201452 (+)
Gene ID: HRGMv2_3504_1_169
Type: TC
Location: 201467 - 202348 (+)
Gene ID: HRGMv2_3504_1_170
Type: TC
Location: 202362 - 203351 (+)
Gene ID: HRGMv2_3504_1_171
Type: TC
Location: 203367 - 204350 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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