Cluster: HRGMv2_3504_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3504
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3504_15 | HRGMv2_3504_15_8 | 8181 | 9149 | + | 9.B.146.1.3 |
| pfam | HRGMv2_3504_15 | HRGMv2_3504_15_9 | 9222 | 10532 | + | Mur_ligase_C | Mur_ligase_M | MurD_N | MurD-like_N |
| TC | HRGMv2_3504_15 | HRGMv2_3504_15_10 | 10483 | 11613 | + | 2.A.103.1.2 |
| CAZyme | HRGMv2_3504_15 | HRGMv2_3504_15_11 | 11628 | 12665 | + | GT28 |
Gene ID: HRGMv2_3504_15_8
Type: TC
Location: 8181 - 9149 (+)
Type: TC
Location: 8181 - 9149 (+)
Gene ID: HRGMv2_3504_15_9
Type: pfam
Location: 9222 - 10532 (+)
Type: pfam
Location: 9222 - 10532 (+)
Gene ID: HRGMv2_3504_15_10
Type: TC
Location: 10483 - 11613 (+)
Type: TC
Location: 10483 - 11613 (+)
Gene ID: HRGMv2_3504_15_11
Type: CAZyme
Location: 11628 - 12665 (+)
Type: CAZyme
Location: 11628 - 12665 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Synergistota
Class
Synergistia
Order
Synergistales
Family
Dethiosulfovibrionaceae
Genus
Pyramidobacter
Species
Pyramidobacter piscolens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.