Cluster: HRGMv2_3490_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3490
- CGC Family ID: CGCFAM_10378
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3490_1 | HRGMv2_3490_1_175 | 190748 | 194230 | - | GH13_39 |
| pfam | HRGMv2_3490_1 | HRGMv2_3490_1_176 | 194387 | 194830 | - | X25_BaPul_like |
| TC | HRGMv2_3490_1 | HRGMv2_3490_1_177 | 194984 | 196621 | - | 1.B.23.1.18 |
| NULL(UNKNOWN) | HRGMv2_3490_1 | HRGMv2_3490_1_178 | 196989 | 197183 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3490_1 | HRGMv2_3490_1_179 | 197646 | 198662 | - | 1.B.52.2.1 |
Gene ID: HRGMv2_3490_1_175
Type: CAZyme
Location: 190748 - 194230 (-)
Type: CAZyme
Location: 190748 - 194230 (-)
Gene ID: HRGMv2_3490_1_176
Type: pfam
Location: 194387 - 194830 (-)
Type: pfam
Location: 194387 - 194830 (-)
Gene ID: HRGMv2_3490_1_177
Type: TC
Location: 194984 - 196621 (-)
Type: TC
Location: 194984 - 196621 (-)
Gene ID: HRGMv2_3490_1_178
Type:
Location: 196989 - 197183 (+)
Type:
Location: 196989 - 197183 (+)
Gene ID: HRGMv2_3490_1_179
Type: TC
Location: 197646 - 198662 (-)
Type: TC
Location: 197646 - 198662 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Selenomonadales
Family
Selenomonadaceae
Genus
Selenomonas_C
Species
Selenomonas_C sp934202005
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.