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Cluster: HRGMv2_3490_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3490_17 HRGMv2_3490_17_45 46525 47907 - 3.B.1.1.1
pfam HRGMv2_3490_17 HRGMv2_3490_17_46 48311 49102 + ETF
pfam HRGMv2_3490_17 HRGMv2_3490_17_47 49121 50320 + ETF_alpha | ETF
CAZyme HRGMv2_3490_17 HRGMv2_3490_17_48 50323 51723 + AA7
TF HRGMv2_3490_17 HRGMv2_3490_17_49 52213 52530 + HTH_5
STP HRGMv2_3490_17 HRGMv2_3490_17_50 52614 53078 + ArsD
TC HRGMv2_3490_17 HRGMv2_3490_17_51 53065 54801 + 3.A.4.1.1
Gene ID: HRGMv2_3490_17_45
Type: TC
Location: 46525 - 47907 (-)
Gene ID: HRGMv2_3490_17_46
Type: pfam
Location: 48311 - 49102 (+)
Gene ID: HRGMv2_3490_17_47
Type: pfam
Location: 49121 - 50320 (+)
Gene ID: HRGMv2_3490_17_48
Type: CAZyme
Location: 50323 - 51723 (+)
Gene ID: HRGMv2_3490_17_49
Type: TF
Location: 52213 - 52530 (+)
Gene ID: HRGMv2_3490_17_50
Type: STP
Location: 52614 - 53078 (+)
Gene ID: HRGMv2_3490_17_51
Type: TC
Location: 53065 - 54801 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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