Cluster: HRGMv2_3490_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3490
- CGC Family ID: CGCFAM_01182
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3490_16 | HRGMv2_3490_16_25 | 28050 | 29657 | + | 3.A.6.2.1 |
| pfam | HRGMv2_3490_16 | HRGMv2_3490_16_26 | 29658 | 30689 | + | FliG_C | FliG_M | FliG_N | FliG_N |
| pfam | HRGMv2_3490_16 | HRGMv2_3490_16_27 | 30682 | 31476 | + | FliH | T3SS_SCTL |
| TC | HRGMv2_3490_16 | HRGMv2_3490_16_28 | 31473 | 32825 | + | 3.A.6.1.1 |
| pfam | HRGMv2_3490_16 | HRGMv2_3490_16_29 | 32822 | 33289 | + | FliJ |
| CAZyme | HRGMv2_3490_16 | HRGMv2_3490_16_30 | 33286 | 33921 | + | GH23 |
Gene ID: HRGMv2_3490_16_25
Type: TC
Location: 28050 - 29657 (+)
Type: TC
Location: 28050 - 29657 (+)
Gene ID: HRGMv2_3490_16_26
Type: pfam
Location: 29658 - 30689 (+)
Type: pfam
Location: 29658 - 30689 (+)
Gene ID: HRGMv2_3490_16_27
Type: pfam
Location: 30682 - 31476 (+)
Type: pfam
Location: 30682 - 31476 (+)
Gene ID: HRGMv2_3490_16_28
Type: TC
Location: 31473 - 32825 (+)
Type: TC
Location: 31473 - 32825 (+)
Gene ID: HRGMv2_3490_16_29
Type: pfam
Location: 32822 - 33289 (+)
Type: pfam
Location: 32822 - 33289 (+)
Gene ID: HRGMv2_3490_16_30
Type: CAZyme
Location: 33286 - 33921 (+)
Type: CAZyme
Location: 33286 - 33921 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Selenomonadales
Family
Selenomonadaceae
Genus
Selenomonas_C
Species
Selenomonas_C sp934202005
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.