Cluster: HRGMv2_3490_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3490
- CGC Family ID: CGCFAM_10377
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3490_14 | HRGMv2_3490_14_1 | 312 | 1661 | - | 2.A.38.1.1 |
| TC | HRGMv2_3490_14 | HRGMv2_3490_14_2 | 2489 | 4204 | - | 8.A.7.1.1 |
| TC | HRGMv2_3490_14 | HRGMv2_3490_14_3 | 4312 | 4578 | - | 8.A.8.1.6 |
| TF | HRGMv2_3490_14 | HRGMv2_3490_14_4 | 4931 | 6616 | - | 0037176 |
| pfam | HRGMv2_3490_14 | HRGMv2_3490_14_5 | 6896 | 7735 | + | VitK2_biosynth |
| CAZyme | HRGMv2_3490_14 | HRGMv2_3490_14_6 | 7938 | 8768 | - | CE4 |
Gene ID: HRGMv2_3490_14_1
Type: TC
Location: 312 - 1661 (-)
Type: TC
Location: 312 - 1661 (-)
Gene ID: HRGMv2_3490_14_2
Type: TC
Location: 2489 - 4204 (-)
Type: TC
Location: 2489 - 4204 (-)
Gene ID: HRGMv2_3490_14_3
Type: TC
Location: 4312 - 4578 (-)
Type: TC
Location: 4312 - 4578 (-)
Gene ID: HRGMv2_3490_14_4
Type: TF
Location: 4931 - 6616 (-)
Type: TF
Location: 4931 - 6616 (-)
Gene ID: HRGMv2_3490_14_5
Type: pfam
Location: 6896 - 7735 (+)
Type: pfam
Location: 6896 - 7735 (+)
Gene ID: HRGMv2_3490_14_6
Type: CAZyme
Location: 7938 - 8768 (-)
Type: CAZyme
Location: 7938 - 8768 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Selenomonadales
Family
Selenomonadaceae
Genus
Selenomonas_C
Species
Selenomonas_C sp934202005
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.