Cluster: HRGMv2_3440_CGC7
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_3440
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3440_2 | HRGMv2_3440_2_70 | 85033 | 86217 | - | GT4 |
| pfam | HRGMv2_3440_2 | HRGMv2_3440_2_71 | 86219 | 87784 | - | LPG_synthase_TM |
| pfam | HRGMv2_3440_2 | HRGMv2_3440_2_72 | 88059 | 89195 | + | LPG_synthase_TM |
| CAZyme | HRGMv2_3440_2 | HRGMv2_3440_2_73 | 89179 | 90036 | + | GT8 |
| TF | HRGMv2_3440_2 | HRGMv2_3440_2_74 | 90157 | 91140 | + | LacI |
| CAZyme | HRGMv2_3440_2 | HRGMv2_3440_2_75 | 91218 | 92417 | - | GH43_33 |
| pfam | HRGMv2_3440_2 | HRGMv2_3440_2_76 | 92425 | 94335 | - | SASA |
| CAZyme | HRGMv2_3440_2 | HRGMv2_3440_2_77 | 94354 | 96522 | - | GH36 |
| pfam | HRGMv2_3440_2 | HRGMv2_3440_2_78 | 96515 | 97561 | - | Lipase_GDSL_2 |
| CAZyme | HRGMv2_3440_2 | HRGMv2_3440_2_79 | 97570 | 100110 | - | GH43_32 |
| CAZyme | HRGMv2_3440_2 | HRGMv2_3440_2_80 | 100107 | 101870 | - | GH43 |
| CAZyme | HRGMv2_3440_2 | HRGMv2_3440_2_81 | 101876 | 103126 | - | GH43_3 |
| CAZyme | HRGMv2_3440_2 | HRGMv2_3440_2_82 | 103126 | 105228 | - | GH43 |
| TC | HRGMv2_3440_2 | HRGMv2_3440_2_83 | 105231 | 107312 | - | 3.A.1.1.26 |
| CAZyme | HRGMv2_3440_2 | HRGMv2_3440_2_84 | 107322 | 109076 | - | GH2 |
| TC | HRGMv2_3440_2 | HRGMv2_3440_2_85 | 109094 | 110044 | - | 3.A.1.1.36 |
| TC | HRGMv2_3440_2 | HRGMv2_3440_2_86 | 110020 | 111093 | - | 3.A.1.1.34 |
Gene ID: HRGMv2_3440_2_70
Type: CAZyme
Location: 85033 - 86217 (-)
Type: CAZyme
Location: 85033 - 86217 (-)
Gene ID: HRGMv2_3440_2_71
Type: pfam
Location: 86219 - 87784 (-)
Type: pfam
Location: 86219 - 87784 (-)
Gene ID: HRGMv2_3440_2_72
Type: pfam
Location: 88059 - 89195 (+)
Type: pfam
Location: 88059 - 89195 (+)
Gene ID: HRGMv2_3440_2_73
Type: CAZyme
Location: 89179 - 90036 (+)
Type: CAZyme
Location: 89179 - 90036 (+)
Gene ID: HRGMv2_3440_2_74
Type: TF
Location: 90157 - 91140 (+)
Type: TF
Location: 90157 - 91140 (+)
Gene ID: HRGMv2_3440_2_75
Type: CAZyme
Location: 91218 - 92417 (-)
Type: CAZyme
Location: 91218 - 92417 (-)
Gene ID: HRGMv2_3440_2_76
Type: pfam
Location: 92425 - 94335 (-)
Type: pfam
Location: 92425 - 94335 (-)
Gene ID: HRGMv2_3440_2_77
Type: CAZyme
Location: 94354 - 96522 (-)
Type: CAZyme
Location: 94354 - 96522 (-)
Gene ID: HRGMv2_3440_2_78
Type: pfam
Location: 96515 - 97561 (-)
Type: pfam
Location: 96515 - 97561 (-)
Gene ID: HRGMv2_3440_2_79
Type: CAZyme
Location: 97570 - 100110 (-)
Type: CAZyme
Location: 97570 - 100110 (-)
Gene ID: HRGMv2_3440_2_80
Type: CAZyme
Location: 100107 - 101870 (-)
Type: CAZyme
Location: 100107 - 101870 (-)
Gene ID: HRGMv2_3440_2_81
Type: CAZyme
Location: 101876 - 103126 (-)
Type: CAZyme
Location: 101876 - 103126 (-)
Gene ID: HRGMv2_3440_2_82
Type: CAZyme
Location: 103126 - 105228 (-)
Type: CAZyme
Location: 103126 - 105228 (-)
Gene ID: HRGMv2_3440_2_83
Type: TC
Location: 105231 - 107312 (-)
Type: TC
Location: 105231 - 107312 (-)
Gene ID: HRGMv2_3440_2_84
Type: CAZyme
Location: 107322 - 109076 (-)
Type: CAZyme
Location: 107322 - 109076 (-)
Gene ID: HRGMv2_3440_2_85
Type: TC
Location: 109094 - 110044 (-)
Type: TC
Location: 109094 - 110044 (-)
Gene ID: HRGMv2_3440_2_86
Type: TC
Location: 110020 - 111093 (-)
Type: TC
Location: 110020 - 111093 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RFN20
Family
CAG-288
Genus
CAG-345
Species
CAG-345 sp000433315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.