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Cluster: HRGMv2_3440_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3440_2 HRGMv2_3440_2_42 48688 51327 + GH28
NULL(UNKNOWN) HRGMv2_3440_2 HRGMv2_3440_2_43 51353 53905 + NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_3440_2 HRGMv2_3440_2_44 53978 55387 + SBP_bac_1
TC HRGMv2_3440_2 HRGMv2_3440_2_45 55441 56298 + 3.A.1.1.20
TC HRGMv2_3440_2 HRGMv2_3440_2_46 56295 57185 + 3.A.1.1.39
CAZyme HRGMv2_3440_2 HRGMv2_3440_2_47 57190 59448 + GH65
CAZyme HRGMv2_3440_2 HRGMv2_3440_2_48 59452 61521 + GH65
TC HRGMv2_3440_2 HRGMv2_3440_2_49 61518 63323 + 3.A.1.1.46
CAZyme HRGMv2_3440_2 HRGMv2_3440_2_50 63320 65056 + GH28
Gene ID: HRGMv2_3440_2_42
Type: CAZyme
Location: 48688 - 51327 (+)
Gene ID: HRGMv2_3440_2_43
Type:
Location: 51353 - 53905 (+)
Gene ID: HRGMv2_3440_2_44
Type: STP
Location: 53978 - 55387 (+)
Gene ID: HRGMv2_3440_2_45
Type: TC
Location: 55441 - 56298 (+)
Gene ID: HRGMv2_3440_2_46
Type: TC
Location: 56295 - 57185 (+)
Gene ID: HRGMv2_3440_2_47
Type: CAZyme
Location: 57190 - 59448 (+)
Gene ID: HRGMv2_3440_2_48
Type: CAZyme
Location: 59452 - 61521 (+)
Gene ID: HRGMv2_3440_2_49
Type: TC
Location: 61518 - 63323 (+)
Gene ID: HRGMv2_3440_2_50
Type: CAZyme
Location: 63320 - 65056 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_I
→
Class
Bacilli_A
→
Order
RFN20
→
Family
CAG-288
→
Genus
CAG-345
→
Species
CAG-345 sp000433315

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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