Cluster: HRGMv2_3440_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_3440
- CGC Family ID: CGCFAM_00117
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3440_13 | HRGMv2_3440_13_4 | 3703 | 5241 | + | 3.A.1.1.27 |
| TC | HRGMv2_3440_13 | HRGMv2_3440_13_5 | 5241 | 6104 | + | 3.A.1.1.27 |
| CAZyme | HRGMv2_3440_13 | HRGMv2_3440_13_6 | 6107 | 7687 | + | GH13_36 |
| TC | HRGMv2_3440_13 | HRGMv2_3440_13_7 | 7705 | 10263 | + | 3.A.1.1.26 |
Gene ID: HRGMv2_3440_13_4
Type: TC
Location: 3703 - 5241 (+)
Type: TC
Location: 3703 - 5241 (+)
Gene ID: HRGMv2_3440_13_5
Type: TC
Location: 5241 - 6104 (+)
Type: TC
Location: 5241 - 6104 (+)
Gene ID: HRGMv2_3440_13_6
Type: CAZyme
Location: 6107 - 7687 (+)
Type: CAZyme
Location: 6107 - 7687 (+)
Gene ID: HRGMv2_3440_13_7
Type: TC
Location: 7705 - 10263 (+)
Type: TC
Location: 7705 - 10263 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RFN20
Family
CAG-288
Genus
CAG-345
Species
CAG-345 sp000433315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.