Cluster: HRGMv2_3440_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3440
- CGC Family ID: CGCFAM_02558
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3440_5 | HRGMv2_3440_5_16 | 14233 | 15216 | - | GH177 |
| CAZyme | HRGMv2_3440_5 | HRGMv2_3440_5_17 | 15216 | 17243 | - | GH177 |
| TF | HRGMv2_3440_5 | HRGMv2_3440_5_18 | 17368 | 18117 | + | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_3440_5 | HRGMv2_3440_5_19 | 18114 | 20108 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3440_5 | HRGMv2_3440_5_20 | 20112 | 21503 | - | 9.B.34.1.1 |
Gene ID: HRGMv2_3440_5_16
Type: CAZyme
Location: 14233 - 15216 (-)
Type: CAZyme
Location: 14233 - 15216 (-)
Gene ID: HRGMv2_3440_5_17
Type: CAZyme
Location: 15216 - 17243 (-)
Type: CAZyme
Location: 15216 - 17243 (-)
Gene ID: HRGMv2_3440_5_18
Type: TF
Location: 17368 - 18117 (+)
Type: TF
Location: 17368 - 18117 (+)
Gene ID: HRGMv2_3440_5_19
Type:
Location: 18114 - 20108 (-)
Type:
Location: 18114 - 20108 (-)
Gene ID: HRGMv2_3440_5_20
Type: TC
Location: 20112 - 21503 (-)
Type: TC
Location: 20112 - 21503 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RFN20
Family
CAG-288
Genus
CAG-345
Species
CAG-345 sp000433315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.