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Cluster: HRGMv2_3440_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3440_3 HRGMv2_3440_3_53 61701 62474 - 9.B.20.1.4
pfam HRGMv2_3440_3 HRGMv2_3440_3_54 62488 63831 - tRNA-synt_1e | DALR_2 | tRNA-synt_1g
TC HRGMv2_3440_3 HRGMv2_3440_3_55 63818 65614 - 3.A.1.106.3
TC HRGMv2_3440_3 HRGMv2_3440_3_56 65616 67376 - 3.A.1.106.13
pfam HRGMv2_3440_3 HRGMv2_3440_3_57 67388 67924 - PemK_toxin
pfam HRGMv2_3440_3 HRGMv2_3440_3_58 67960 69279 - UPF0004 | Radical_SAM | TRAM_2
TC HRGMv2_3440_3 HRGMv2_3440_3_59 69611 72325 + 3.A.12.1.1
peptidase HRGMv2_3440_3 HRGMv2_3440_3_60 72420 73697 + M16.UNW
pfam HRGMv2_3440_3 HRGMv2_3440_3_61 73700 74026 + ACPS
CAZyme HRGMv2_3440_3 HRGMv2_3440_3_62 74029 76158 + GH13_14
Gene ID: HRGMv2_3440_3_53
Type: TC
Location: 61701 - 62474 (-)
Gene ID: HRGMv2_3440_3_54
Type: pfam
Location: 62488 - 63831 (-)
Gene ID: HRGMv2_3440_3_55
Type: TC
Location: 63818 - 65614 (-)
Gene ID: HRGMv2_3440_3_56
Type: TC
Location: 65616 - 67376 (-)
Gene ID: HRGMv2_3440_3_57
Type: pfam
Location: 67388 - 67924 (-)
Gene ID: HRGMv2_3440_3_58
Type: pfam
Location: 67960 - 69279 (-)
Gene ID: HRGMv2_3440_3_59
Type: TC
Location: 69611 - 72325 (+)
Gene ID: HRGMv2_3440_3_60
Type: peptidase
Location: 72420 - 73697 (+)
Gene ID: HRGMv2_3440_3_61
Type: pfam
Location: 73700 - 74026 (+)
Gene ID: HRGMv2_3440_3_62
Type: CAZyme
Location: 74029 - 76158 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_I
→
Class
Bacilli_A
→
Order
RFN20
→
Family
CAG-288
→
Genus
CAG-345
→
Species
CAG-345 sp000433315

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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