Cluster: HRGMv2_3406_CGC2
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3406
- CGC Family ID: CGCFAM_05329
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3406_5 | HRGMv2_3406_5_18 | 19672 | 20415 | + | 3.A.1.103.4 |
| TC | HRGMv2_3406_5 | HRGMv2_3406_5_19 | 20426 | 21199 | + | 3.A.1.103.4 |
| CAZyme | HRGMv2_3406_5 | HRGMv2_3406_5_20 | 21208 | 23376 | + | GT2 | GT2 |
| pfam | HRGMv2_3406_5 | HRGMv2_3406_5_21 | 23381 | 25732 | + | GtrA_DPMS_TM | DUF2142 |
| CAZyme | HRGMv2_3406_5 | HRGMv2_3406_5_22 | 25789 | 26505 | + | GT2 |
| pfam | HRGMv2_3406_5 | HRGMv2_3406_5_23 | 26502 | 26852 | + | DUF2304 |
| NULL(UNKNOWN) | HRGMv2_3406_5 | HRGMv2_3406_5_24 | 26845 | 28083 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3406_5 | HRGMv2_3406_5_25 | 28191 | 29186 | + | GT8 |
| pfam | HRGMv2_3406_5 | HRGMv2_3406_5_26 | 29183 | 29971 | + | Glycos_transf_2 |
| CAZyme | HRGMv2_3406_5 | HRGMv2_3406_5_27 | 30032 | 30991 | + | GT2 |
| CAZyme | HRGMv2_3406_5 | HRGMv2_3406_5_28 | 30996 | 31967 | + | GT2 |
| CAZyme | HRGMv2_3406_5 | HRGMv2_3406_5_29 | 32330 | 33280 | + | GT2 |
Gene ID: HRGMv2_3406_5_18
Type: TC
Location: 19672 - 20415 (+)
Type: TC
Location: 19672 - 20415 (+)
Gene ID: HRGMv2_3406_5_19
Type: TC
Location: 20426 - 21199 (+)
Type: TC
Location: 20426 - 21199 (+)
Gene ID: HRGMv2_3406_5_20
Type: CAZyme
Location: 21208 - 23376 (+)
Type: CAZyme
Location: 21208 - 23376 (+)
Gene ID: HRGMv2_3406_5_21
Type: pfam
Location: 23381 - 25732 (+)
Type: pfam
Location: 23381 - 25732 (+)
Gene ID: HRGMv2_3406_5_22
Type: CAZyme
Location: 25789 - 26505 (+)
Type: CAZyme
Location: 25789 - 26505 (+)
Gene ID: HRGMv2_3406_5_23
Type: pfam
Location: 26502 - 26852 (+)
Type: pfam
Location: 26502 - 26852 (+)
Gene ID: HRGMv2_3406_5_24
Type:
Location: 26845 - 28083 (+)
Type:
Location: 26845 - 28083 (+)
Gene ID: HRGMv2_3406_5_25
Type: CAZyme
Location: 28191 - 29186 (+)
Type: CAZyme
Location: 28191 - 29186 (+)
Gene ID: HRGMv2_3406_5_26
Type: pfam
Location: 29183 - 29971 (+)
Type: pfam
Location: 29183 - 29971 (+)
Gene ID: HRGMv2_3406_5_27
Type: CAZyme
Location: 30032 - 30991 (+)
Type: CAZyme
Location: 30032 - 30991 (+)
Gene ID: HRGMv2_3406_5_28
Type: CAZyme
Location: 30996 - 31967 (+)
Type: CAZyme
Location: 30996 - 31967 (+)
Gene ID: HRGMv2_3406_5_29
Type: CAZyme
Location: 32330 - 33280 (+)
Type: CAZyme
Location: 32330 - 33280 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RF39
Family
UBA660
Genus
RUG11198
Species
RUG11198 sp934176955
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.