Cluster: HRGMv2_3292_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3292
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3292_3 | HRGMv2_3292_3_381 | 388595 | 389989 | - | 2.A.66.1.12 |
| pfam | HRGMv2_3292_3 | HRGMv2_3292_3_382 | 390240 | 391382 | + | 2-Hacid_dh | 2-Hacid_dh_C | DUF3410 |
| NULL(UNKNOWN) | HRGMv2_3292_3 | HRGMv2_3292_3_383 | 391485 | 391658 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3292_3 | HRGMv2_3292_3_384 | 391903 | 393681 | + | 3.A.1.201.8 |
| CAZyme | HRGMv2_3292_3 | HRGMv2_3292_3_385 | 393815 | 395743 | - | GH23 |
| TC | HRGMv2_3292_3 | HRGMv2_3292_3_386 | 395957 | 397879 | + | 3.A.1.120.6 |
Gene ID: HRGMv2_3292_3_381
Type: TC
Location: 388595 - 389989 (-)
Type: TC
Location: 388595 - 389989 (-)
Gene ID: HRGMv2_3292_3_382
Type: pfam
Location: 390240 - 391382 (+)
Type: pfam
Location: 390240 - 391382 (+)
Gene ID: HRGMv2_3292_3_383
Type:
Location: 391485 - 391658 (-)
Type:
Location: 391485 - 391658 (-)
Gene ID: HRGMv2_3292_3_384
Type: TC
Location: 391903 - 393681 (+)
Type: TC
Location: 391903 - 393681 (+)
Gene ID: HRGMv2_3292_3_385
Type: CAZyme
Location: 393815 - 395743 (-)
Type: CAZyme
Location: 393815 - 395743 (-)
Gene ID: HRGMv2_3292_3_386
Type: TC
Location: 395957 - 397879 (+)
Type: TC
Location: 395957 - 397879 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.