Cluster: HRGMv2_3292_CGC42
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3292
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3292_25 | HRGMv2_3292_25_13 | 10384 | 11019 | + | AA10 |
| CAZyme | HRGMv2_3292_25 | HRGMv2_3292_25_14 | 11060 | 12124 | + | GH18 |
| pfam | HRGMv2_3292_25 | HRGMv2_3292_25_15 | 12259 | 13584 | - | MR_MLE_C |
| TC | HRGMv2_3292_25 | HRGMv2_3292_25_16 | 13604 | 14953 | - | 2.A.1.14.3 |
Gene ID: HRGMv2_3292_25_13
Type: CAZyme
Location: 10384 - 11019 (+)
Type: CAZyme
Location: 10384 - 11019 (+)
Gene ID: HRGMv2_3292_25_14
Type: CAZyme
Location: 11060 - 12124 (+)
Type: CAZyme
Location: 11060 - 12124 (+)
Gene ID: HRGMv2_3292_25_15
Type: pfam
Location: 12259 - 13584 (-)
Type: pfam
Location: 12259 - 13584 (-)
Gene ID: HRGMv2_3292_25_16
Type: TC
Location: 13604 - 14953 (-)
Type: TC
Location: 13604 - 14953 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.