Cluster: HRGMv2_3292_CGC41
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3292
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3292_23 | HRGMv2_3292_23_7 | 4739 | 7159 | - | GT51 |
| NULL(UNKNOWN) | HRGMv2_3292_23 | HRGMv2_3292_23_8 | 7276 | 7569 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | HRGMv2_3292_23 | HRGMv2_3292_23_9 | 7693 | 12588 | - | I39.008 |
| TC | HRGMv2_3292_23 | HRGMv2_3292_23_10 | 12888 | 14234 | + | 2.A.66.1.4 |
Gene ID: HRGMv2_3292_23_7
Type: CAZyme
Location: 4739 - 7159 (-)
Type: CAZyme
Location: 4739 - 7159 (-)
Gene ID: HRGMv2_3292_23_8
Type:
Location: 7276 - 7569 (+)
Type:
Location: 7276 - 7569 (+)
Gene ID: HRGMv2_3292_23_9
Type: peptidase
Location: 7693 - 12588 (-)
Type: peptidase
Location: 7693 - 12588 (-)
Gene ID: HRGMv2_3292_23_10
Type: TC
Location: 12888 - 14234 (+)
Type: TC
Location: 12888 - 14234 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.