Cluster: HRGMv2_3292_CGC34
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3292
- CGC Family ID: CGCFAM_03893
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3292_14 | HRGMv2_3292_14_91 | 93022 | 93909 | + | 1.A.16.4.1 |
| TC | HRGMv2_3292_14 | HRGMv2_3292_14_92 | 93903 | 95162 | - | 2.A.36.6.8 |
| TC | HRGMv2_3292_14 | HRGMv2_3292_14_93 | 95266 | 96099 | + | 2.A.7.31.3 |
| pfam | HRGMv2_3292_14 | HRGMv2_3292_14_94 | 96129 | 96515 | + | MAPEG |
| CAZyme | HRGMv2_3292_14 | HRGMv2_3292_14_95 | 96640 | 97833 | - | GH102 |
Gene ID: HRGMv2_3292_14_91
Type: TC
Location: 93022 - 93909 (+)
Type: TC
Location: 93022 - 93909 (+)
Gene ID: HRGMv2_3292_14_92
Type: TC
Location: 93903 - 95162 (-)
Type: TC
Location: 93903 - 95162 (-)
Gene ID: HRGMv2_3292_14_93
Type: TC
Location: 95266 - 96099 (+)
Type: TC
Location: 95266 - 96099 (+)
Gene ID: HRGMv2_3292_14_94
Type: pfam
Location: 96129 - 96515 (+)
Type: pfam
Location: 96129 - 96515 (+)
Gene ID: HRGMv2_3292_14_95
Type: CAZyme
Location: 96640 - 97833 (-)
Type: CAZyme
Location: 96640 - 97833 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.