Cluster: HRGMv2_3292_CGC33
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3292
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3292_14 | HRGMv2_3292_14_32 | 35688 | 37088 | + | 3.A.5.1.1 |
| TC | HRGMv2_3292_14 | HRGMv2_3292_14_33 | 37085 | 37756 | + | 3.A.1.140.1 |
| TC | HRGMv2_3292_14 | HRGMv2_3292_14_34 | 37753 | 38775 | + | 3.A.1.140.1 |
| STP | HRGMv2_3292_14 | HRGMv2_3292_14_35 | 38906 | 39760 | + | Sigma70_r2 | Sigma70_r4 |
| CAZyme | HRGMv2_3292_14 | HRGMv2_3292_14_36 | 39949 | 40671 | - | GT51 |
Gene ID: HRGMv2_3292_14_32
Type: TC
Location: 35688 - 37088 (+)
Type: TC
Location: 35688 - 37088 (+)
Gene ID: HRGMv2_3292_14_33
Type: TC
Location: 37085 - 37756 (+)
Type: TC
Location: 37085 - 37756 (+)
Gene ID: HRGMv2_3292_14_34
Type: TC
Location: 37753 - 38775 (+)
Type: TC
Location: 37753 - 38775 (+)
Gene ID: HRGMv2_3292_14_35
Type: STP
Location: 38906 - 39760 (+)
Type: STP
Location: 38906 - 39760 (+)
Gene ID: HRGMv2_3292_14_36
Type: CAZyme
Location: 39949 - 40671 (-)
Type: CAZyme
Location: 39949 - 40671 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.