Cluster: HRGMv2_3292_CGC30
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3292
- CGC Family ID: CGCFAM_10351
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3292_11 | HRGMv2_3292_11_55 | 63727 | 64752 | - | 8.A.21.2.4 |
| pfam | HRGMv2_3292_11 | HRGMv2_3292_11_56 | 64947 | 65657 | + | His_Phos_1 | His_Phos_1 |
| pfam | HRGMv2_3292_11 | HRGMv2_3292_11_57 | 65714 | 66028 | + | SCP2 | Alkyl_sulf_C |
| CAZyme | HRGMv2_3292_11 | HRGMv2_3292_11_58 | 66221 | 68857 | - | GH63 |
Gene ID: HRGMv2_3292_11_55
Type: TC
Location: 63727 - 64752 (-)
Type: TC
Location: 63727 - 64752 (-)
Gene ID: HRGMv2_3292_11_56
Type: pfam
Location: 64947 - 65657 (+)
Type: pfam
Location: 64947 - 65657 (+)
Gene ID: HRGMv2_3292_11_57
Type: pfam
Location: 65714 - 66028 (+)
Type: pfam
Location: 65714 - 66028 (+)
Gene ID: HRGMv2_3292_11_58
Type: CAZyme
Location: 66221 - 68857 (-)
Type: CAZyme
Location: 66221 - 68857 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.