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Cluster: HRGMv2_3292_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3292_10 HRGMv2_3292_10_90 80087 81067 + 1.B.6.1.2
pfam HRGMv2_3292_10 HRGMv2_3292_10_91 81128 81871 - TP_methylase
TC HRGMv2_3292_10 HRGMv2_3292_10_92 81882 84590 - 3.D.1.9.2
pfam HRGMv2_3292_10 HRGMv2_3292_10_93 84590 84907 - Rieske | Rieske_2
STP HRGMv2_3292_10 HRGMv2_3292_10_94 84904 87357 - NIR_SIR | NIR_SIR_ferr | Pyr_redox_2
TC HRGMv2_3292_10 HRGMv2_3292_10_95 87590 89257 - 9.B.106.3.1
TC HRGMv2_3292_10 HRGMv2_3292_10_96 89257 90468 - 2.A.1.8.2
STP HRGMv2_3292_10 HRGMv2_3292_10_97 90615 91190 - ANTAR | Response_reg
pfam HRGMv2_3292_10 HRGMv2_3292_10_98 91204 92403 - NMT1_2
TC HRGMv2_3292_10 HRGMv2_3292_10_99 92650 93570 + 1.B.22.3.2
pfam HRGMv2_3292_10 HRGMv2_3292_10_100 93585 93800 + FliMN_C
TF HRGMv2_3292_10 HRGMv2_3292_10_101 93937 94353 + Trans_reg_C
CAZyme HRGMv2_3292_10 HRGMv2_3292_10_102 94340 94807 + GH23
pfam HRGMv2_3292_10 HRGMv2_3292_10_103 94893 95912 + DHO_dh
pfam HRGMv2_3292_10 HRGMv2_3292_10_104 96788 99052 + UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st
TC HRGMv2_3292_10 HRGMv2_3292_10_105 99277 101661 + 9.B.34.1.3
peptidase HRGMv2_3292_10 HRGMv2_3292_10_106 101783 103243 - S13.003
pfam HRGMv2_3292_10 HRGMv2_3292_10_107 103480 103824 + YggL_50S_bp
TC HRGMv2_3292_10 HRGMv2_3292_10_108 103862 105052 - 2.A.46.1.9
Gene ID: HRGMv2_3292_10_90
Type: TC
Location: 80087 - 81067 (+)
Gene ID: HRGMv2_3292_10_91
Type: pfam
Location: 81128 - 81871 (-)
Gene ID: HRGMv2_3292_10_92
Type: TC
Location: 81882 - 84590 (-)
Gene ID: HRGMv2_3292_10_93
Type: pfam
Location: 84590 - 84907 (-)
Gene ID: HRGMv2_3292_10_94
Type: STP
Location: 84904 - 87357 (-)
Gene ID: HRGMv2_3292_10_95
Type: TC
Location: 87590 - 89257 (-)
Gene ID: HRGMv2_3292_10_96
Type: TC
Location: 89257 - 90468 (-)
Gene ID: HRGMv2_3292_10_97
Type: STP
Location: 90615 - 91190 (-)
Gene ID: HRGMv2_3292_10_98
Type: pfam
Location: 91204 - 92403 (-)
Gene ID: HRGMv2_3292_10_99
Type: TC
Location: 92650 - 93570 (+)
Gene ID: HRGMv2_3292_10_100
Type: pfam
Location: 93585 - 93800 (+)
Gene ID: HRGMv2_3292_10_101
Type: TF
Location: 93937 - 94353 (+)
Gene ID: HRGMv2_3292_10_102
Type: CAZyme
Location: 94340 - 94807 (+)
Gene ID: HRGMv2_3292_10_103
Type: pfam
Location: 94893 - 95912 (+)
Gene ID: HRGMv2_3292_10_104
Type: pfam
Location: 96788 - 99052 (+)
Gene ID: HRGMv2_3292_10_105
Type: TC
Location: 99277 - 101661 (+)
Gene ID: HRGMv2_3292_10_106
Type: peptidase
Location: 101783 - 103243 (-)
Gene ID: HRGMv2_3292_10_107
Type: pfam
Location: 103480 - 103824 (+)
Gene ID: HRGMv2_3292_10_108
Type: TC
Location: 103862 - 105052 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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