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Cluster: HRGMv2_3292_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3292_9 HRGMv2_3292_9_188 203341 203970 - 2.A.76.1.10
STP HRGMv2_3292_9 HRGMv2_3292_9_189 204140 204655 + Sigma70_r2 | Sigma70_r4_2
STP HRGMv2_3292_9 HRGMv2_3292_9_190 204642 205592 + FecR
TC HRGMv2_3292_9 HRGMv2_3292_9_191 205697 208186 + 1.B.14.1.6
TC HRGMv2_3292_9 HRGMv2_3292_9_192 208592 210031 + 9.B.18.1.1
pfam HRGMv2_3292_9 HRGMv2_3292_9_193 210031 211488 + NTP_transferase | MannoseP_isomer | Cupin_2 | NTP_transf_3 | ManC_GMP_beta-helix
CAZyme HRGMv2_3292_9 HRGMv2_3292_9_194 211490 212401 + GT2
pfam HRGMv2_3292_9 HRGMv2_3292_9_195 212407 213207 + Poly_export | SLBB_2
NULL(UNKNOWN) HRGMv2_3292_9 HRGMv2_3292_9_196 213222 215213 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3292_9 HRGMv2_3292_9_197 215213 216403 + GT4
CAZyme HRGMv2_3292_9 HRGMv2_3292_9_198 216393 217721 + GH39
CAZyme HRGMv2_3292_9 HRGMv2_3292_9_199 217730 218947 + GT4
CAZyme HRGMv2_3292_9 HRGMv2_3292_9_200 218938 220041 + GT4
pfam HRGMv2_3292_9 HRGMv2_3292_9_201 220038 221471 + Wzy_C
TC HRGMv2_3292_9 HRGMv2_3292_9_202 221471 222880 + 2.A.66.4.7
Gene ID: HRGMv2_3292_9_188
Type: TC
Location: 203341 - 203970 (-)
Gene ID: HRGMv2_3292_9_189
Type: STP
Location: 204140 - 204655 (+)
Gene ID: HRGMv2_3292_9_190
Type: STP
Location: 204642 - 205592 (+)
Gene ID: HRGMv2_3292_9_191
Type: TC
Location: 205697 - 208186 (+)
Gene ID: HRGMv2_3292_9_192
Type: TC
Location: 208592 - 210031 (+)
Gene ID: HRGMv2_3292_9_193
Type: pfam
Location: 210031 - 211488 (+)
Gene ID: HRGMv2_3292_9_194
Type: CAZyme
Location: 211490 - 212401 (+)
Gene ID: HRGMv2_3292_9_195
Type: pfam
Location: 212407 - 213207 (+)
Gene ID: HRGMv2_3292_9_196
Type:
Location: 213222 - 215213 (+)
Gene ID: HRGMv2_3292_9_197
Type: CAZyme
Location: 215213 - 216403 (+)
Gene ID: HRGMv2_3292_9_198
Type: CAZyme
Location: 216393 - 217721 (+)
Gene ID: HRGMv2_3292_9_199
Type: CAZyme
Location: 217730 - 218947 (+)
Gene ID: HRGMv2_3292_9_200
Type: CAZyme
Location: 218938 - 220041 (+)
Gene ID: HRGMv2_3292_9_201
Type: pfam
Location: 220038 - 221471 (+)
Gene ID: HRGMv2_3292_9_202
Type: TC
Location: 221471 - 222880 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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