Cluster: HRGMv2_3292_CGC26
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3292
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3292_9 | HRGMv2_3292_9_124 | 131295 | 132962 | + | AA3_2 |
| TC | HRGMv2_3292_9 | HRGMv2_3292_9_125 | 133054 | 134676 | + | 2.A.1.6.8 |
| TC | HRGMv2_3292_9 | HRGMv2_3292_9_126 | 134892 | 136847 | + | 3.A.7.7.1 |
Gene ID: HRGMv2_3292_9_124
Type: CAZyme
Location: 131295 - 132962 (+)
Type: CAZyme
Location: 131295 - 132962 (+)
Gene ID: HRGMv2_3292_9_125
Type: TC
Location: 133054 - 134676 (+)
Type: TC
Location: 133054 - 134676 (+)
Gene ID: HRGMv2_3292_9_126
Type: TC
Location: 134892 - 136847 (+)
Type: TC
Location: 134892 - 136847 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.