Cluster: HRGMv2_3292_CGC25
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3292
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3292_9 | HRGMv2_3292_9_109 | 113217 | 113933 | - | 9.B.20.1.1 |
| TC | HRGMv2_3292_9 | HRGMv2_3292_9_110 | 114097 | 116802 | - | 3.A.3.4.1 |
| pfam | HRGMv2_3292_9 | HRGMv2_3292_9_111 | 117612 | 118211 | - | Acetyltransf_1 | FR47 | Acetyltransf_10 |
| pfam | HRGMv2_3292_9 | HRGMv2_3292_9_112 | 118223 | 118567 | - | FKBP_C |
| CAZyme | HRGMv2_3292_9 | HRGMv2_3292_9_113 | 118824 | 119444 | - | GH23 |
Gene ID: HRGMv2_3292_9_109
Type: TC
Location: 113217 - 113933 (-)
Type: TC
Location: 113217 - 113933 (-)
Gene ID: HRGMv2_3292_9_110
Type: TC
Location: 114097 - 116802 (-)
Type: TC
Location: 114097 - 116802 (-)
Gene ID: HRGMv2_3292_9_111
Type: pfam
Location: 117612 - 118211 (-)
Type: pfam
Location: 117612 - 118211 (-)
Gene ID: HRGMv2_3292_9_112
Type: pfam
Location: 118223 - 118567 (-)
Type: pfam
Location: 118223 - 118567 (-)
Gene ID: HRGMv2_3292_9_113
Type: CAZyme
Location: 118824 - 119444 (-)
Type: CAZyme
Location: 118824 - 119444 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.