Cluster: HRGMv2_3292_CGC23
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3292
- CGC Family ID: CGCFAM_00076
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3292_8 | HRGMv2_3292_8_160 | 170031 | 170363 | - | 3.A.11.2.2 |
| TC | HRGMv2_3292_8 | HRGMv2_3292_8_161 | 170677 | 172686 | - | 9.B.18.2.1 |
| pfam | HRGMv2_3292_8 | HRGMv2_3292_8_162 | 172824 | 174002 | - | DegT_DnrJ_EryC1 |
| pfam | HRGMv2_3292_8 | HRGMv2_3292_8_163 | 174102 | 174728 | - | PglD_N |
| TC | HRGMv2_3292_8 | HRGMv2_3292_8_164 | 174725 | 175321 | - | 9.B.18.1.2 |
| CAZyme | HRGMv2_3292_8 | HRGMv2_3292_8_165 | 175318 | 176427 | - | GT4 |
| CAZyme | HRGMv2_3292_8 | HRGMv2_3292_8_166 | 176538 | 178367 | - | PL12 |
Gene ID: HRGMv2_3292_8_160
Type: TC
Location: 170031 - 170363 (-)
Type: TC
Location: 170031 - 170363 (-)
Gene ID: HRGMv2_3292_8_161
Type: TC
Location: 170677 - 172686 (-)
Type: TC
Location: 170677 - 172686 (-)
Gene ID: HRGMv2_3292_8_162
Type: pfam
Location: 172824 - 174002 (-)
Type: pfam
Location: 172824 - 174002 (-)
Gene ID: HRGMv2_3292_8_163
Type: pfam
Location: 174102 - 174728 (-)
Type: pfam
Location: 174102 - 174728 (-)
Gene ID: HRGMv2_3292_8_164
Type: TC
Location: 174725 - 175321 (-)
Type: TC
Location: 174725 - 175321 (-)
Gene ID: HRGMv2_3292_8_165
Type: CAZyme
Location: 175318 - 176427 (-)
Type: CAZyme
Location: 175318 - 176427 (-)
Gene ID: HRGMv2_3292_8_166
Type: CAZyme
Location: 176538 - 178367 (-)
Type: CAZyme
Location: 176538 - 178367 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.