Cluster: HRGMv2_3292_CGC22
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3292
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3292_8 | HRGMv2_3292_8_140 | 144959 | 146380 | - | GH23 |
| pfam | HRGMv2_3292_8 | HRGMv2_3292_8_141 | 146617 | 147423 | + | TatD_DNase |
| TC | HRGMv2_3292_8 | HRGMv2_3292_8_142 | 147520 | 148989 | + | 1.B.52.2.1 |
Gene ID: HRGMv2_3292_8_140
Type: CAZyme
Location: 144959 - 146380 (-)
Type: CAZyme
Location: 144959 - 146380 (-)
Gene ID: HRGMv2_3292_8_141
Type: pfam
Location: 146617 - 147423 (+)
Type: pfam
Location: 146617 - 147423 (+)
Gene ID: HRGMv2_3292_8_142
Type: TC
Location: 147520 - 148989 (+)
Type: TC
Location: 147520 - 148989 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.