Cluster: HRGMv2_3292_CGC21
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3292
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3292_8 | HRGMv2_3292_8_48 | 55124 | 56782 | - | 2.A.21.7.2 |
| TC | HRGMv2_3292_8 | HRGMv2_3292_8_49 | 56779 | 57090 | - | 9.B.136.1.1 |
| TC | HRGMv2_3292_8 | HRGMv2_3292_8_50 | 57323 | 58174 | - | 3.A.1.12.12 |
| CAZyme | HRGMv2_3292_8 | HRGMv2_3292_8_51 | 58507 | 60060 | + | GH17 |
Gene ID: HRGMv2_3292_8_48
Type: TC
Location: 55124 - 56782 (-)
Type: TC
Location: 55124 - 56782 (-)
Gene ID: HRGMv2_3292_8_49
Type: TC
Location: 56779 - 57090 (-)
Type: TC
Location: 56779 - 57090 (-)
Gene ID: HRGMv2_3292_8_50
Type: TC
Location: 57323 - 58174 (-)
Type: TC
Location: 57323 - 58174 (-)
Gene ID: HRGMv2_3292_8_51
Type: CAZyme
Location: 58507 - 60060 (+)
Type: CAZyme
Location: 58507 - 60060 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.