Cluster: HRGMv2_3292_CGC20
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3292
- CGC Family ID: CGCFAM_07790
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3292_7 | HRGMv2_3292_7_208 | 225224 | 225883 | + | GT2 |
| STP | HRGMv2_3292_7 | HRGMv2_3292_7_209 | 226172 | 226933 | + | PIG-L |
| TC | HRGMv2_3292_7 | HRGMv2_3292_7_210 | 227146 | 229299 | + | 1.B.14.1.6 |
| TC | HRGMv2_3292_7 | HRGMv2_3292_7_211 | 229484 | 230971 | + | 1.B.52.2.1 |
Gene ID: HRGMv2_3292_7_208
Type: CAZyme
Location: 225224 - 225883 (+)
Type: CAZyme
Location: 225224 - 225883 (+)
Gene ID: HRGMv2_3292_7_209
Type: STP
Location: 226172 - 226933 (+)
Type: STP
Location: 226172 - 226933 (+)
Gene ID: HRGMv2_3292_7_210
Type: TC
Location: 227146 - 229299 (+)
Type: TC
Location: 227146 - 229299 (+)
Gene ID: HRGMv2_3292_7_211
Type: TC
Location: 229484 - 230971 (+)
Type: TC
Location: 229484 - 230971 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.