Cluster: HRGMv2_3292_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3292
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3292_1 | HRGMv2_3292_1_154 | 189214 | 190596 | - | 1.B.22.2.1 |
| pfam | HRGMv2_3292_1 | HRGMv2_3292_1_155 | 190609 | 191580 | - | PilO | PilP |
| pfam | HRGMv2_3292_1 | HRGMv2_3292_1_156 | 191577 | 192128 | - | PilN |
| TC | HRGMv2_3292_1 | HRGMv2_3292_1_157 | 192125 | 192781 | - | 3.A.11.1.3 |
| CAZyme | HRGMv2_3292_1 | HRGMv2_3292_1_158 | 193011 | 195476 | + | GT51 |
Gene ID: HRGMv2_3292_1_154
Type: TC
Location: 189214 - 190596 (-)
Type: TC
Location: 189214 - 190596 (-)
Gene ID: HRGMv2_3292_1_155
Type: pfam
Location: 190609 - 191580 (-)
Type: pfam
Location: 190609 - 191580 (-)
Gene ID: HRGMv2_3292_1_156
Type: pfam
Location: 191577 - 192128 (-)
Type: pfam
Location: 191577 - 192128 (-)
Gene ID: HRGMv2_3292_1_157
Type: TC
Location: 192125 - 192781 (-)
Type: TC
Location: 192125 - 192781 (-)
Gene ID: HRGMv2_3292_1_158
Type: CAZyme
Location: 193011 - 195476 (+)
Type: CAZyme
Location: 193011 - 195476 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.