Cluster: HRGMv2_3292_CGC19
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_3292
- CGC Family ID: CGCFAM_06214
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3292_7 | HRGMv2_3292_7_193 | 207080 | 208075 | + | 8.A.5.1.5 |
| pfam | HRGMv2_3292_7 | HRGMv2_3292_7_194 | 208209 | 208667 | + | Polyketide_cyc2 |
| pfam | HRGMv2_3292_7 | HRGMv2_3292_7_195 | 208761 | 209207 | + | DUF411 |
| TC | HRGMv2_3292_7 | HRGMv2_3292_7_196 | 209217 | 209654 | + | 9.B.27.3.3 |
| peptidase | HRGMv2_3292_7 | HRGMv2_3292_7_197 | 209700 | 210701 | + | S33.UPW |
| pfam | HRGMv2_3292_7 | HRGMv2_3292_7_198 | 210727 | 211680 | + | 2-Hacid_dh | 2-Hacid_dh_C |
| CAZyme | HRGMv2_3292_7 | HRGMv2_3292_7_199 | 212141 | 213697 | + | GT5 |
| CAZyme | HRGMv2_3292_7 | HRGMv2_3292_7_200 | 213729 | 215474 | + | GH13_10 |
| CAZyme | HRGMv2_3292_7 | HRGMv2_3292_7_201 | 215471 | 217555 | + | GH77 |
| CAZyme | HRGMv2_3292_7 | HRGMv2_3292_7_202 | 217552 | 220302 | + | GH13_26 |
| pfam | HRGMv2_3292_7 | HRGMv2_3292_7_203 | 220326 | 220595 | + | DUF2934 |
| CAZyme | HRGMv2_3292_7 | HRGMv2_3292_7_204 | 220717 | 222876 | + | GH13_11 |
Gene ID: HRGMv2_3292_7_193
Type: TC
Location: 207080 - 208075 (+)
Type: TC
Location: 207080 - 208075 (+)
Gene ID: HRGMv2_3292_7_194
Type: pfam
Location: 208209 - 208667 (+)
Type: pfam
Location: 208209 - 208667 (+)
Gene ID: HRGMv2_3292_7_195
Type: pfam
Location: 208761 - 209207 (+)
Type: pfam
Location: 208761 - 209207 (+)
Gene ID: HRGMv2_3292_7_196
Type: TC
Location: 209217 - 209654 (+)
Type: TC
Location: 209217 - 209654 (+)
Gene ID: HRGMv2_3292_7_197
Type: peptidase
Location: 209700 - 210701 (+)
Type: peptidase
Location: 209700 - 210701 (+)
Gene ID: HRGMv2_3292_7_198
Type: pfam
Location: 210727 - 211680 (+)
Type: pfam
Location: 210727 - 211680 (+)
Gene ID: HRGMv2_3292_7_199
Type: CAZyme
Location: 212141 - 213697 (+)
Type: CAZyme
Location: 212141 - 213697 (+)
Gene ID: HRGMv2_3292_7_200
Type: CAZyme
Location: 213729 - 215474 (+)
Type: CAZyme
Location: 213729 - 215474 (+)
Gene ID: HRGMv2_3292_7_201
Type: CAZyme
Location: 215471 - 217555 (+)
Type: CAZyme
Location: 215471 - 217555 (+)
Gene ID: HRGMv2_3292_7_202
Type: CAZyme
Location: 217552 - 220302 (+)
Type: CAZyme
Location: 217552 - 220302 (+)
Gene ID: HRGMv2_3292_7_203
Type: pfam
Location: 220326 - 220595 (+)
Type: pfam
Location: 220326 - 220595 (+)
Gene ID: HRGMv2_3292_7_204
Type: CAZyme
Location: 220717 - 222876 (+)
Type: CAZyme
Location: 220717 - 222876 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.