Cluster: HRGMv2_3292_CGC18
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3292
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3292_7 | HRGMv2_3292_7_169 | 180349 | 182412 | - | GH13_33 |
| TF | HRGMv2_3292_7 | HRGMv2_3292_7_170 | 182566 | 183375 | - | HTH_AraC |
| TC | HRGMv2_3292_7 | HRGMv2_3292_7_171 | 183563 | 185188 | + | 2.A.3.11.1 |
Gene ID: HRGMv2_3292_7_169
Type: CAZyme
Location: 180349 - 182412 (-)
Type: CAZyme
Location: 180349 - 182412 (-)
Gene ID: HRGMv2_3292_7_170
Type: TF
Location: 182566 - 183375 (-)
Type: TF
Location: 182566 - 183375 (-)
Gene ID: HRGMv2_3292_7_171
Type: TC
Location: 183563 - 185188 (+)
Type: TC
Location: 183563 - 185188 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.