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Cluster: HRGMv2_3292_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3292_7 HRGMv2_3292_7_50 57275 58936 - 1.B.52.2.1
TC HRGMv2_3292_7 HRGMv2_3292_7_51 59046 60242 + 2.A.1.2.9
pfam HRGMv2_3292_7 HRGMv2_3292_7_52 60383 61297 - Phage_integrase
NULL(UNKNOWN) HRGMv2_3292_7 HRGMv2_3292_7_53 61406 62218 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3292_7 HRGMv2_3292_7_54 62630 63670 + GT2
pfam HRGMv2_3292_7 HRGMv2_3292_7_55 63667 65658 + Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd
pfam HRGMv2_3292_7 HRGMv2_3292_7_56 65658 66542 + Polysacc_deac_1
CAZyme HRGMv2_3292_7 HRGMv2_3292_7_57 66539 68194 + GT83
TC HRGMv2_3292_7 HRGMv2_3292_7_58 68191 68538 + 2.A.7.22.2
TC HRGMv2_3292_7 HRGMv2_3292_7_59 68535 68948 + 2.A.7.33.2
pfam HRGMv2_3292_7 HRGMv2_3292_7_60 68945 70327 + UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme HRGMv2_3292_7 HRGMv2_3292_7_61 70328 71950 + GT83
Gene ID: HRGMv2_3292_7_50
Type: TC
Location: 57275 - 58936 (-)
Gene ID: HRGMv2_3292_7_51
Type: TC
Location: 59046 - 60242 (+)
Gene ID: HRGMv2_3292_7_52
Type: pfam
Location: 60383 - 61297 (-)
Gene ID: HRGMv2_3292_7_53
Type:
Location: 61406 - 62218 (-)
Gene ID: HRGMv2_3292_7_54
Type: CAZyme
Location: 62630 - 63670 (+)
Gene ID: HRGMv2_3292_7_55
Type: pfam
Location: 63667 - 65658 (+)
Gene ID: HRGMv2_3292_7_56
Type: pfam
Location: 65658 - 66542 (+)
Gene ID: HRGMv2_3292_7_57
Type: CAZyme
Location: 66539 - 68194 (+)
Gene ID: HRGMv2_3292_7_58
Type: TC
Location: 68191 - 68538 (+)
Gene ID: HRGMv2_3292_7_59
Type: TC
Location: 68535 - 68948 (+)
Gene ID: HRGMv2_3292_7_60
Type: pfam
Location: 68945 - 70327 (+)
Gene ID: HRGMv2_3292_7_61
Type: CAZyme
Location: 70328 - 71950 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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