Cluster: HRGMv2_3292_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3292
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3292_6 | HRGMv2_3292_6_256 | 286856 | 287977 | - | GT4 |
| TC | HRGMv2_3292_6 | HRGMv2_3292_6_257 | 288200 | 290089 | - | 1.B.52.2.1 |
| pfam | HRGMv2_3292_6 | HRGMv2_3292_6_258 | 290295 | 291773 | + | DUF87 | HerA_C |
| pfam | HRGMv2_3292_6 | HRGMv2_3292_6_259 | 291778 | 292233 | - | DciA |
| TC | HRGMv2_3292_6 | HRGMv2_3292_6_260 | 292540 | 295275 | + | 3.A.5.1.1 |
Gene ID: HRGMv2_3292_6_256
Type: CAZyme
Location: 286856 - 287977 (-)
Type: CAZyme
Location: 286856 - 287977 (-)
Gene ID: HRGMv2_3292_6_257
Type: TC
Location: 288200 - 290089 (-)
Type: TC
Location: 288200 - 290089 (-)
Gene ID: HRGMv2_3292_6_258
Type: pfam
Location: 290295 - 291773 (+)
Type: pfam
Location: 290295 - 291773 (+)
Gene ID: HRGMv2_3292_6_259
Type: pfam
Location: 291778 - 292233 (-)
Type: pfam
Location: 291778 - 292233 (-)
Gene ID: HRGMv2_3292_6_260
Type: TC
Location: 292540 - 295275 (+)
Type: TC
Location: 292540 - 295275 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.