Cluster: HRGMv2_3292_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3292
- CGC Family ID: CGCFAM_00558
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3292_6 | HRGMv2_3292_6_164 | 181530 | 183227 | - | 4.A.1.1.15 |
| TC | HRGMv2_3292_6 | HRGMv2_3292_6_165 | 183254 | 185767 | - | 4.A.1.1.15 |
| STP | HRGMv2_3292_6 | HRGMv2_3292_6_166 | 185798 | 186820 | - | SIS | SIS |
| CAZyme | HRGMv2_3292_6 | HRGMv2_3292_6_167 | 186801 | 187907 | - | CE9 |
Gene ID: HRGMv2_3292_6_164
Type: TC
Location: 181530 - 183227 (-)
Type: TC
Location: 181530 - 183227 (-)
Gene ID: HRGMv2_3292_6_165
Type: TC
Location: 183254 - 185767 (-)
Type: TC
Location: 183254 - 185767 (-)
Gene ID: HRGMv2_3292_6_166
Type: STP
Location: 185798 - 186820 (-)
Type: STP
Location: 185798 - 186820 (-)
Gene ID: HRGMv2_3292_6_167
Type: CAZyme
Location: 186801 - 187907 (-)
Type: CAZyme
Location: 186801 - 187907 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.