Cluster: HRGMv2_3292_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3292
- CGC Family ID: CGCFAM_05744
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3292_6 | HRGMv2_3292_6_155 | 167183 | 168625 | + | 4.A.1.2.8 |
| CAZyme | HRGMv2_3292_6 | HRGMv2_3292_6_156 | 168748 | 170394 | + | GH13_29 |
| TC | HRGMv2_3292_6 | HRGMv2_3292_6_157 | 170560 | 171780 | + | 1.B.3.1.1 |
| TC | HRGMv2_3292_6 | HRGMv2_3292_6_158 | 171900 | 174434 | + | 4.A.1.1.15 |
| NULL(UNKNOWN) | HRGMv2_3292_6 | HRGMv2_3292_6_159 | 174437 | 174715 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3292_6 | HRGMv2_3292_6_160 | 174852 | 176312 | - | GH23 |
Gene ID: HRGMv2_3292_6_155
Type: TC
Location: 167183 - 168625 (+)
Type: TC
Location: 167183 - 168625 (+)
Gene ID: HRGMv2_3292_6_156
Type: CAZyme
Location: 168748 - 170394 (+)
Type: CAZyme
Location: 168748 - 170394 (+)
Gene ID: HRGMv2_3292_6_157
Type: TC
Location: 170560 - 171780 (+)
Type: TC
Location: 170560 - 171780 (+)
Gene ID: HRGMv2_3292_6_158
Type: TC
Location: 171900 - 174434 (+)
Type: TC
Location: 171900 - 174434 (+)
Gene ID: HRGMv2_3292_6_159
Type:
Location: 174437 - 174715 (+)
Type:
Location: 174437 - 174715 (+)
Gene ID: HRGMv2_3292_6_160
Type: CAZyme
Location: 174852 - 176312 (-)
Type: CAZyme
Location: 174852 - 176312 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.