Cluster: HRGMv2_3292_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3292
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3292_4 | HRGMv2_3292_4_165 | 213013 | 214083 | - | GT28 |
| TC | HRGMv2_3292_4 | HRGMv2_3292_4_166 | 214073 | 215296 | - | 2.A.103.1.1 |
| pfam | HRGMv2_3292_4 | HRGMv2_3292_4_167 | 215293 | 216639 | - | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | HRGMv2_3292_4 | HRGMv2_3292_4_168 | 216646 | 217728 | - | 9.B.146.1.6 |
Gene ID: HRGMv2_3292_4_165
Type: CAZyme
Location: 213013 - 214083 (-)
Type: CAZyme
Location: 213013 - 214083 (-)
Gene ID: HRGMv2_3292_4_166
Type: TC
Location: 214073 - 215296 (-)
Type: TC
Location: 214073 - 215296 (-)
Gene ID: HRGMv2_3292_4_167
Type: pfam
Location: 215293 - 216639 (-)
Type: pfam
Location: 215293 - 216639 (-)
Gene ID: HRGMv2_3292_4_168
Type: TC
Location: 216646 - 217728 (-)
Type: TC
Location: 216646 - 217728 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.